PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma14g00200.1
Common NameZOSMA_14G00200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 225aa    MW: 25567.4 Da    PI: 9.9641
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma14g00200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.8e-0748101454
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54 
                      +h  +ErrRR+++ + f  Lr ++ +  s+ +  K    K  +Le Av  I++L
  Zosma14g00200.1  48 THTDVERRRREKLSKLFIALRHVVQTnKSSSQIIKrsTIKTLVLEDAVAVINEL 101
                      89************************6654444440355666689999999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.04544101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-847119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-548101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.85E-548105No hitNo description
Gene3DG3DSA:4.10.280.102.7E-848122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-450107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGLTHVGDML ILLILYIFTL NFHISVDLIP LIMSSPFLLA SLKITPITHT DVERRRREKL  60
SKLFIALRHV VQTNKSSSQI IKRSTIKTLV LEDAVAVINE LKTNITALEF EGEILRSQIK  120
SPERIDKIEK MGVMEHKLLN IEVTKVGKDV MLIRMQSDKM NHPAARLMTV LKELDFEIGF  180
ASLSVIENIT IQHVTILMSD TTDRILYTKD QLVTVLNAKL VRFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257ERRRRE
25358RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PWF01e-159A0A0K9PWF0_Z
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.19e-27bHLH family protein